Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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SMCL Lung Bhattacharjee Cluster Number 22 (103 genes) This page contains all miRNA mediated regulation and functional enrichment for SMCL Lung Bhattacharjee cluster number 22. Information about lung cancer can be found on Wikipedia, and further information about the "SMCL Lung Bhattacharjee" dataset can be found in Bhattacharjee et al., 2001. Inferred miRNA Mediated Regulation Weeder-miRvestigator PITA TargetScan zzz999 hsa-mir-548n hsa-mir-548n Gene Ontology Enrichment GO ID GO Term Annotated Genes in Cluster GO:0000375 RNA splicing, via transesterification reactions 15 GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 15 GO:0000398 nuclear mRNA splicing, via spliceosome 15 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 65 GO:0006288 base-excision repair, DNA ligation 2 GO:0006396 RNA processing 24 GO:0006397 mRNA processing 22 GO:0006403 RNA localization 9 GO:0006405 RNA export from nucleus 5 GO:0006613 cotranslational protein targeting to membrane 3 GO:0008152 metabolic process 80 GO:0008380 RNA splicing 19 GO:0010467 gene expression 57 GO:0015931 nucleobase, nucleoside, nucleotide and nucleic acid transport 9 GO:0016070 RNA metabolic process 54 GO:0016071 mRNA metabolic process 27 GO:0043170 macromolecule metabolic process 70 GO:0044237 cellular metabolic process 77 GO:0044238 primary metabolic process 79 GO:0044260 cellular macromolecule metabolic process 69 GO:0046796 viral genome transport in host cell 2 GO:0046907 intracellular transport 18 GO:0050657 nucleic acid transport 9 GO:0050658 RNA transport 9 GO:0051028 mRNA transport 6 GO:0051236 establishment of RNA localization 9 Overlap Between miRNA Target Genes and Enriched Gene Ontology Annotations miRNA Method GO ID GO Term Overlap GO Annotated Genes Cluster Size miRNA Targets Genes P-Value hsa-mir-548n TargetScan GO:0000375 RNA splicing, via transesterification reactions 11 15 103 45 0.002493677 hsa-mir-548n PITA GO:0000375 RNA splicing, via transesterification reactions 6 15 103 21 0.01232288 hsa-mir-548n TargetScan GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 11 15 103 45 0.002493677 hsa-mir-548n PITA GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 6 15 103 21 0.01232288 hsa-mir-548n TargetScan GO:0000398 nuclear mRNA splicing, via spliceosome 11 15 103 45 0.002493677 hsa-mir-548n PITA GO:0000398 nuclear mRNA splicing, via spliceosome 6 15 103 21 0.01232288 hsa-mir-548n TargetScan GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 31 65 103 45 0.1003901 hsa-mir-548n PITA GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 17 65 103 21 0.0127088 hsa-mir-548n TargetScan GO:0006288 base-excision repair, DNA ligation 2 2 103 45 0.0 hsa-mir-548n PITA GO:0006288 base-excision repair, DNA ligation 1 2 103 21 0.03997716 hsa-mir-548n TargetScan GO:0006396 RNA processing 13 24 103 45 0.07865548 hsa-mir-548n PITA GO:0006396 RNA processing 8 24 103 21 0.0218038 hsa-mir-548n TargetScan GO:0006397 mRNA processing 13 22 103 45 0.02997699 hsa-mir-548n PITA GO:0006397 mRNA processing 8 22 103 21 0.01092113 hsa-mir-548n TargetScan GO:0006403 RNA localization 5 9 103 45 0.1353641 hsa-mir-548n PITA GO:0006403 RNA localization 2 9 103 21 0.2668907 hsa-mir-548n TargetScan GO:0006405 RNA export from nucleus 2 5 103 45 0.3806153 hsa-mir-548n PITA GO:0006405 RNA export from nucleus 1 5 103 21 0.2687379 hsa-mir-548n TargetScan GO:0006613 cotranslational protein targeting to membrane 0 3 103 45 0.8255254 hsa-mir-548n PITA GO:0006613 cotranslational protein targeting to membrane 0 3 103 21 0.4992395 hsa-mir-548n TargetScan GO:0008152 metabolic process 40 80 103 45 0.003193542 hsa-mir-548n PITA GO:0008152 metabolic process 19 80 103 21 0.02241903 hsa-mir-548n TargetScan GO:0008380 RNA splicing 13 19 103 45 0.003797635 hsa-mir-548n PITA GO:0008380 RNA splicing 8 19 103 21 0.00303677 hsa-mir-548n TargetScan GO:0010467 gene expression 29 57 103 45 0.03266083 hsa-mir-548n PITA GO:0010467 gene expression 19 57 103 21 1.417659e-05 hsa-mir-548n TargetScan GO:0015931 nucleobase, nucleoside, nucleotide and nucleic acid transport 5 9 103 45 0.1353641 hsa-mir-548n PITA GO:0015931 nucleobase, nucleoside, nucleotide and nucleic acid transport 2 9 103 21 0.2668907 hsa-mir-548n TargetScan GO:0016070 RNA metabolic process 28 54 103 45 0.02510806 hsa-mir-548n PITA GO:0016070 RNA metabolic process 16 54 103 21 0.002945122 hsa-mir-548n TargetScan GO:0016071 mRNA metabolic process 15 27 103 45 0.04744817 hsa-mir-548n PITA GO:0016071 mRNA metabolic process 8 27 103 21 0.0512716 hsa-mir-548n TargetScan GO:0043170 macromolecule metabolic process 37 70 103 45 0.001322826 hsa-mir-548n PITA GO:0043170 macromolecule metabolic process 19 70 103 21 0.001404699 hsa-mir-548n TargetScan GO:0044237 cellular metabolic process 37 77 103 45 0.03730471 hsa-mir-548n PITA GO:0044237 cellular metabolic process 18 77 103 21 0.05084016 hsa-mir-548n TargetScan GO:0044238 primary metabolic process 39 79 103 45 0.008329256 hsa-mir-548n PITA GO:0044238 primary metabolic process 18 79 103 21 0.07725896 hsa-mir-548n TargetScan GO:0044260 cellular macromolecule metabolic process 36 69 103 45 0.003185509 hsa-mir-548n PITA GO:0044260 cellular macromolecule metabolic process 18 69 103 21 0.007394046 hsa-mir-548n TargetScan GO:0046796 viral genome transport in host cell 0 2 103 45 0.6853227 hsa-mir-548n PITA GO:0046796 viral genome transport in host cell 0 2 103 21 0.3677898 hsa-mir-548n TargetScan GO:0046907 intracellular transport 6 18 103 45 0.7606626 hsa-mir-548n PITA GO:0046907 intracellular transport 1 18 103 21 0.9273659 hsa-mir-548n TargetScan GO:0050657 nucleic acid transport 5 9 103 45 0.1353641 hsa-mir-548n PITA GO:0050657 nucleic acid transport 2 9 103 21 0.2668907 hsa-mir-548n TargetScan GO:0050658 RNA transport 5 9 103 45 0.1353641 hsa-mir-548n PITA GO:0050658 RNA transport 2 9 103 21 0.2668907 hsa-mir-548n TargetScan GO:0051028 mRNA transport 4 6 103 45 0.05525588 hsa-mir-548n PITA GO:0051028 mRNA transport 1 6 103 21 0.3543658 hsa-mir-548n TargetScan GO:0051236 establishment of RNA localization 5 9 103 45 0.1353641 hsa-mir-548n PITA GO:0051236 establishment of RNA localization 2 9 103 21 0.2668907

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